Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.84■□□□□ 0.77
CASP4P49662 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.84■□□□□ 0.77
CASP4P49662 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CASP4P49662 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.84■□□□□ 0.77
CASP4P49662 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
CASP4P49662 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.84■□□□□ 0.77
CASP4P49662 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 AC092647.4-201ENST00000457211 535 ntBASIC19.84■□□□□ 0.77
CASP4P49662 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.84■□□□□ 0.77
CASP4P49662 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.84■□□□□ 0.77
CASP4P49662 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 HYMAI.1-201ENST00000620949 238 ntBASIC19.84■□□□□ 0.77
CASP4P49662 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
CASP4P49662 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.84■□□□□ 0.77
CASP4P49662 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CASP4P49662 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CASP4P49662 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.83■□□□□ 0.77
CASP4P49662 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CASP4P49662 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.77
CASP4P49662 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.83■□□□□ 0.77
CASP4P49662 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.83■□□□□ 0.77
CASP4P49662 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.83■□□□□ 0.77
CASP4P49662 HLA-F-220ENST00000434407 884 ntBASIC19.83■□□□□ 0.77
CASP4P49662 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CASP4P49662 AC112907.2-201ENST00000448639 330 ntBASIC19.83■□□□□ 0.77
CASP4P49662 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.83■□□□□ 0.77
CASP4P49662 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.83■□□□□ 0.77
CASP4P49662 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
CASP4P49662 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CASP4P49662 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 FLJ13224-201ENST00000313737 1514 ntBASIC19.82■□□□□ 0.76
CASP4P49662 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.82■□□□□ 0.76
CASP4P49662 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CASP4P49662 FAM8A6P-201ENST00000407496 1135 ntBASIC19.82■□□□□ 0.76
CASP4P49662 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.82■□□□□ 0.76
CASP4P49662 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 HOMER2P1-201ENST00000455653 964 ntBASIC19.82■□□□□ 0.76
CASP4P49662 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.82■□□□□ 0.76
CASP4P49662 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.82■□□□□ 0.76
CASP4P49662 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CASP4P49662 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.81■□□□□ 0.76
CASP4P49662 LINC00167-201ENST00000530583 1419 ntBASIC19.81■□□□□ 0.76
CASP4P49662 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.81■□□□□ 0.76
CASP4P49662 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CASP4P49662 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.81■□□□□ 0.76
CASP4P49662 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CASP4P49662 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms