Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFC3P40938 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.65■□□□□ 0.26
RFC3P40938 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.65■□□□□ 0.26
RFC3P40938 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RFC3P40938 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
RFC3P40938 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.64■□□□□ 0.25
RFC3P40938 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.64■□□□□ 0.25
RFC3P40938 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.64■□□□□ 0.25
RFC3P40938 TPM4P1-201ENST00000436100 807 ntBASIC16.64■□□□□ 0.25
RFC3P40938 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 UNC93B7-201ENST00000509439 705 ntBASIC16.64■□□□□ 0.25
RFC3P40938 FOSL1P1-201ENST00000511041 816 ntBASIC16.64■□□□□ 0.25
RFC3P40938 AC074051.2-201ENST00000565115 352 ntBASIC16.64■□□□□ 0.25
RFC3P40938 AC090616.6-201ENST00000582640 721 ntBASIC16.64■□□□□ 0.25
RFC3P40938 AC138894.3-201ENST00000603787 634 ntBASIC16.64■□□□□ 0.25
RFC3P40938 AL592071.1-201ENST00000611956 408 ntBASIC16.64■□□□□ 0.25
RFC3P40938 AC004263.2-201ENST00000617183 678 ntBASIC16.64■□□□□ 0.25
RFC3P40938 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.64■□□□□ 0.25
RFC3P40938 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 AC009102.3-201ENST00000623118 1491 ntBASIC16.64■□□□□ 0.25
RFC3P40938 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.64■□□□□ 0.25
RFC3P40938 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 MYLKP1-201ENST00000509077 1580 ntBASIC16.64■□□□□ 0.25
RFC3P40938 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RFC3P40938 AL353692.3-201ENST00000407031 1396 ntBASIC16.64■□□□□ 0.25
RFC3P40938 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFC3P40938 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
RFC3P40938 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
RFC3P40938 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 MIR149-201ENST00000384879 89 ntBASIC16.63■□□□□ 0.25
RFC3P40938 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.63■□□□□ 0.25
RFC3P40938 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.63■□□□□ 0.25
RFC3P40938 AC026396.1-201ENST00000419388 421 ntBASIC16.63■□□□□ 0.25
RFC3P40938 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 AL845331.1-201ENST00000424978 1190 ntBASIC16.63■□□□□ 0.25
RFC3P40938 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.63■□□□□ 0.25
RFC3P40938 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.63■□□□□ 0.25
RFC3P40938 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.63■□□□□ 0.25
RFC3P40938 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.63■□□□□ 0.25
RFC3P40938 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.63■□□□□ 0.25
RFC3P40938 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.63■□□□□ 0.25
RFC3P40938 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.63■□□□□ 0.25
RFC3P40938 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RFC3P40938 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RFC3P40938 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFC3P40938 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.62■□□□□ 0.25
RFC3P40938 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.62■□□□□ 0.25
RFC3P40938 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.62■□□□□ 0.25
RFC3P40938 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.62■□□□□ 0.25
RFC3P40938 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RFC3P40938 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.62■□□□□ 0.25
RFC3P40938 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.62■□□□□ 0.25
RFC3P40938 RN7SL510P-201ENST00000581311 263 ntBASIC16.62■□□□□ 0.25
RFC3P40938 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
RFC3P40938 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.62■□□□□ 0.25
RFC3P40938 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFC3P40938 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms