Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.44■□□□□ 0.86
CIITAP33076 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.44■□□□□ 0.86
CIITAP33076 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.44■□□□□ 0.86
CIITAP33076 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.44■□□□□ 0.86
CIITAP33076 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CIITAP33076 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.44■□□□□ 0.86
CIITAP33076 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.44■□□□□ 0.86
CIITAP33076 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CIITAP33076 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CIITAP33076 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.43■□□□□ 0.86
CIITAP33076 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CIITAP33076 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CIITAP33076 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.43■□□□□ 0.86
CIITAP33076 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CIITAP33076 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
CIITAP33076 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 TOB2P1-201ENST00000469761 992 ntBASIC20.43■□□□□ 0.86
CIITAP33076 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.43■□□□□ 0.86
CIITAP33076 AP005901.3-202ENST00000581653 237 ntBASIC20.43■□□□□ 0.86
CIITAP33076 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.43■□□□□ 0.86
CIITAP33076 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CIITAP33076 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.43■□□□□ 0.86
CIITAP33076 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.43■□□□□ 0.86
CIITAP33076 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CIITAP33076 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
CIITAP33076 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 AC091607.1-201ENST00000490318 1060 ntBASIC20.42■□□□□ 0.86
CIITAP33076 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CIITAP33076 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.42■□□□□ 0.86
CIITAP33076 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.42■□□□□ 0.86
CIITAP33076 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CIITAP33076 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CIITAP33076 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CIITAP33076 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CIITAP33076 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CIITAP33076 IGHV3-47-201ENST00000425060 335 ntBASIC20.41■□□□□ 0.86
CIITAP33076 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 LINC00265-3P-201ENST00000447588 903 ntBASIC20.41■□□□□ 0.86
CIITAP33076 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms