Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL5A1P20908 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 BX323043.1-201ENST00000641006 1765 ntBASIC17.37■□□□□ 0.37
COL5A1P20908 AP002414.3-201ENST00000589352 1468 ntBASIC17.37■□□□□ 0.37
COL5A1P20908 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL5A1P20908 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.37■□□□□ 0.37
COL5A1P20908 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A1P20908 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.37■□□□□ 0.37
COL5A1P20908 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 NKAPP1-205ENST00000585790 367 ntBASIC17.37■□□□□ 0.37
COL5A1P20908 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL5A1P20908 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A1P20908 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.36■□□□□ 0.37
COL5A1P20908 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.36■□□□□ 0.37
COL5A1P20908 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL5A1P20908 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL5A1P20908 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A1P20908 LINC01126-201ENST00000623515 1646 ntBASIC17.35■□□□□ 0.37
COL5A1P20908 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 AC007967.3-201ENST00000434308 558 ntBASIC17.35■□□□□ 0.37
COL5A1P20908 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.35■□□□□ 0.37
COL5A1P20908 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.35■□□□□ 0.37
COL5A1P20908 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 AL355385.1-201ENST00000606123 409 ntBASIC17.35■□□□□ 0.37
COL5A1P20908 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 SIGLEC16-201ENST00000599858 1437 ntBASIC17.35■□□□□ 0.37
COL5A1P20908 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL5A1P20908 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 DNAJB3-202ENST00000449667 1266 ntBASIC17.35■□□□□ 0.37
COL5A1P20908 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.35■□□□□ 0.37
COL5A1P20908 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL5A1P20908 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A1P20908 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL5A1P20908 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A1P20908 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL5A1P20908 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.34■□□□□ 0.37
COL5A1P20908 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.34■□□□□ 0.37
COL5A1P20908 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A1P20908 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A1P20908 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms