Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL078644.1-201ENST00000609881 752 ntBASIC18.66■□□□□ 0.58
COL9A1P20849 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
COL9A1P20849 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COL9A1P20849 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 AP002414.3-201ENST00000589352 1468 ntBASIC18.65■□□□□ 0.58
COL9A1P20849 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL9A1P20849 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.65■□□□□ 0.58
COL9A1P20849 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 RCN1P2-201ENST00000398357 915 ntBASIC18.65■□□□□ 0.58
COL9A1P20849 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
COL9A1P20849 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC18.65■□□□□ 0.58
COL9A1P20849 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.65■□□□□ 0.58
COL9A1P20849 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.65■□□□□ 0.58
COL9A1P20849 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.65■□□□□ 0.58
COL9A1P20849 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.65■□□□□ 0.58
COL9A1P20849 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL9A1P20849 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.65■□□□□ 0.58
COL9A1P20849 Z98044.1-201ENST00000632503 1764 ntBASIC18.65■□□□□ 0.58
COL9A1P20849 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
COL9A1P20849 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL9A1P20849 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.64■□□□□ 0.58
COL9A1P20849 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL9A1P20849 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL9A1P20849 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL9A1P20849 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.64■□□□□ 0.57
COL9A1P20849 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.64■□□□□ 0.57
COL9A1P20849 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL9A1P20849 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 AC093214.1-201ENST00000511688 1107 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.64■□□□□ 0.57
COL9A1P20849 AP005018.1-201ENST00000525475 301 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL9A1P20849 AC024563.2-201ENST00000603282 481 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 AC073592.5-201ENST00000624854 528 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 AFG3L1P-217ENST00000557444 2447 ntBASIC18.64■□□□□ 0.57
COL9A1P20849 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL9A1P20849 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.64■□□□□ 0.57
COL9A1P20849 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL9A1P20849 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.64■□□□□ 0.57
COL9A1P20849 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL9A1P20849 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL9A1P20849 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL9A1P20849 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.63■□□□□ 0.57
COL9A1P20849 KRT18P2-201ENST00000447938 1258 ntBASIC18.63■□□□□ 0.57
COL9A1P20849 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
COL9A1P20849 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL9A1P20849 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 CR383656.12-201ENST00000549567 513 ntBASIC18.63■□□□□ 0.57
COL9A1P20849 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.63■□□□□ 0.57
COL9A1P20849 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL9A1P20849 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.63■□□□□ 0.57
COL9A1P20849 AL357033.4-201ENST00000617703 1807 ntBASIC18.63■□□□□ 0.57
COL9A1P20849 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL9A1P20849 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL9A1P20849 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 AL032819.2-201ENST00000624543 2162 ntBASIC18.62■□□□□ 0.57
COL9A1P20849 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.62■□□□□ 0.57
COL9A1P20849 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.62■□□□□ 0.57
COL9A1P20849 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.62■□□□□ 0.57
COL9A1P20849 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.62■□□□□ 0.57
COL9A1P20849 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.62■□□□□ 0.57
COL9A1P20849 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.62■□□□□ 0.57
COL9A1P20849 AC025678.2-201ENST00000562061 970 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms