Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KRT19P2-202ENST00000557173 1012 ntBASIC18.7■□□□□ 0.58
VCANP13611 LINC02560-201ENST00000596379 459 ntBASIC18.7■□□□□ 0.58
VCANP13611 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.7■□□□□ 0.58
VCANP13611 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
VCANP13611 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 RCC2P3-201ENST00000418112 1537 ntBASIC18.7■□□□□ 0.58
VCANP13611 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
VCANP13611 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.7■□□□□ 0.58
VCANP13611 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VCANP13611 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 COX5BP8-201ENST00000416911 349 ntBASIC18.7■□□□□ 0.58
VCANP13611 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.7■□□□□ 0.58
VCANP13611 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 AC108073.2-201ENST00000464002 357 ntBASIC18.7■□□□□ 0.58
VCANP13611 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 SPTSSB-204ENST00000617024 1292 ntBASIC18.7■□□□□ 0.58
VCANP13611 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 MIR1909-201ENST00000411312 80 ntBASIC18.69■□□□□ 0.58
VCANP13611 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.69■□□□□ 0.58
VCANP13611 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.69■□□□□ 0.58
VCANP13611 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VCANP13611 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.69■□□□□ 0.58
VCANP13611 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
VCANP13611 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.69■□□□□ 0.58
VCANP13611 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VCANP13611 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VCANP13611 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCANP13611 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.68■□□□□ 0.58
VCANP13611 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.68■□□□□ 0.58
VCANP13611 AC027307.3-201ENST00000594262 1100 ntBASIC18.68■□□□□ 0.58
VCANP13611 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.68■□□□□ 0.58
VCANP13611 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.68■□□□□ 0.58
VCANP13611 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.68■□□□□ 0.58
VCANP13611 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.68■□□□□ 0.58
VCANP13611 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VCANP13611 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VCANP13611 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.68■□□□□ 0.58
VCANP13611 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.68■□□□□ 0.58
VCANP13611 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.68■□□□□ 0.58
VCANP13611 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCANP13611 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.67■□□□□ 0.58
VCANP13611 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCANP13611 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCANP13611 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VCANP13611 IGLL3P-201ENST00000412472 434 ntBASIC18.67■□□□□ 0.58
VCANP13611 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.67■□□□□ 0.58
VCANP13611 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.67■□□□□ 0.58
VCANP13611 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
VCANP13611 ZNF815P-204ENST00000434898 1737 ntBASIC18.67■□□□□ 0.58
VCANP13611 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCANP13611 PMPCAP1-201ENST00000508114 1576 ntBASIC18.67■□□□□ 0.58
VCANP13611 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCANP13611 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VCANP13611 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.67■□□□□ 0.58
VCANP13611 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.67■□□□□ 0.58
VCANP13611 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.67■□□□□ 0.58
VCANP13611 MIR4525-201ENST00000580000 75 ntBASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms