Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.14■□□□□ 0.98
COL2A1P02458 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.14■□□□□ 0.98
COL2A1P02458 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.98
COL2A1P02458 AD001527.2-201ENST00000622994 785 ntBASIC21.14■□□□□ 0.98
COL2A1P02458 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.14■□□□□ 0.98
COL2A1P02458 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 PMPCAP1-201ENST00000508114 1576 ntBASIC21.14■□□□□ 0.97
COL2A1P02458 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.14■□□□□ 0.97
COL2A1P02458 SIGLEC16-201ENST00000599858 1437 ntBASIC21.14■□□□□ 0.97
COL2A1P02458 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL2A1P02458 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL2A1P02458 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.13■□□□□ 0.97
COL2A1P02458 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.13■□□□□ 0.97
COL2A1P02458 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL2A1P02458 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
COL2A1P02458 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.13■□□□□ 0.97
COL2A1P02458 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.13■□□□□ 0.97
COL2A1P02458 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.13■□□□□ 0.97
COL2A1P02458 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC21.13■□□□□ 0.97
COL2A1P02458 AC116407.3-201ENST00000623905 1129 ntBASIC21.13■□□□□ 0.97
COL2A1P02458 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 AC107918.4-202ENST00000641623 219 ntBASIC21.13■□□□□ 0.97
COL2A1P02458 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL2A1P02458 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
COL2A1P02458 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.13■□□□□ 0.97
COL2A1P02458 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.13■□□□□ 0.97
COL2A1P02458 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.13■□□□□ 0.97
COL2A1P02458 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.13■□□□□ 0.97
COL2A1P02458 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
COL2A1P02458 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.13■□□□□ 0.97
COL2A1P02458 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL2A1P02458 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL2A1P02458 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
COL2A1P02458 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL2A1P02458 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.12■□□□□ 0.97
COL2A1P02458 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 LAGE3P1-201ENST00000425356 484 ntBASIC21.12■□□□□ 0.97
COL2A1P02458 AC012640.2-201ENST00000561606 901 ntBASIC21.12■□□□□ 0.97
COL2A1P02458 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.12■□□□□ 0.97
COL2A1P02458 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.12■□□□□ 0.97
COL2A1P02458 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.12■□□□□ 0.97
COL2A1P02458 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL2A1P02458 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL2A1P02458 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
COL2A1P02458 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.11■□□□□ 0.97
COL2A1P02458 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.11■□□□□ 0.97
COL2A1P02458 NKAPP1-205ENST00000585790 367 ntBASIC21.11■□□□□ 0.97
COL2A1P02458 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.11■□□□□ 0.97
COL2A1P02458 MTDHP4-201ENST00000600287 670 ntBASIC21.11■□□□□ 0.97
COL2A1P02458 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 HLA-J-201ENST00000462773 1622 ntBASIC21.11■□□□□ 0.97
COL2A1P02458 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
COL2A1P02458 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL2A1P02458 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.1■□□□□ 0.97
COL2A1P02458 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.1■□□□□ 0.97
COL2A1P02458 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL2A1P02458 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL2A1P02458 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL2A1P02458 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL2A1P02458 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL2A1P02458 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms