Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.8■□□□□ 0.44
SIX3O95343 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX3O95343 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.8■□□□□ 0.44
SIX3O95343 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.8■□□□□ 0.44
SIX3O95343 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.8■□□□□ 0.44
SIX3O95343 MIR4497-201ENST00000583208 89 ntBASIC17.8■□□□□ 0.44
SIX3O95343 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 AC010947.1-201ENST00000623454 693 ntBASIC17.8■□□□□ 0.44
SIX3O95343 AC010653.2-201ENST00000623505 997 ntBASIC17.8■□□□□ 0.44
SIX3O95343 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX3O95343 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SIX3O95343 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX3O95343 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SIX3O95343 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SIX3O95343 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SIX3O95343 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX3O95343 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX3O95343 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.8■□□□□ 0.44
SIX3O95343 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SIX3O95343 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SIX3O95343 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SIX3O95343 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SIX3O95343 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.79■□□□□ 0.44
SIX3O95343 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SIX3O95343 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
SIX3O95343 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.79■□□□□ 0.44
SIX3O95343 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 EGLN1P1-201ENST00000531623 762 ntBASIC17.79■□□□□ 0.44
SIX3O95343 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SIX3O95343 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SIX3O95343 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SIX3O95343 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX3O95343 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
SIX3O95343 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SIX3O95343 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SIX3O95343 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX3O95343 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX3O95343 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.78■□□□□ 0.44
SIX3O95343 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.78■□□□□ 0.44
SIX3O95343 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX3O95343 AC010240.3-201ENST00000607688 395 ntBASIC17.78■□□□□ 0.44
SIX3O95343 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX3O95343 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX3O95343 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX3O95343 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SIX3O95343 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.77■□□□□ 0.44
SIX3O95343 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX3O95343 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.77■□□□□ 0.44
SIX3O95343 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX3O95343 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SIX3O95343 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX3O95343 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms