Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 ARMC10P1-201ENST00000313754 855 ntBASIC17.12■□□□□ 0.33
LDB3O75112 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.12■□□□□ 0.33
LDB3O75112 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.12■□□□□ 0.33
LDB3O75112 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 BCL2-203ENST00000589955 5011 ntBASIC17.12■□□□□ 0.33
LDB3O75112 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 REXO1L9P-201ENST00000604264 2108 ntBASIC17.12■□□□□ 0.33
LDB3O75112 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB3O75112 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LDB3O75112 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
LDB3O75112 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LDB3O75112 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB3O75112 AL096828.2-201ENST00000567259 1965 ntBASIC17.11■□□□□ 0.33
LDB3O75112 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB3O75112 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB3O75112 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB3O75112 KRT18P48-201ENST00000434763 852 ntBASIC17.11■□□□□ 0.33
LDB3O75112 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.11■□□□□ 0.33
LDB3O75112 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB3O75112 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB3O75112 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB3O75112 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDB3O75112 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB3O75112 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB3O75112 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB3O75112 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB3O75112 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LDB3O75112 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 MIR662-201ENST00000384847 95 ntBASIC17.1■□□□□ 0.33
LDB3O75112 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB3O75112 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB3O75112 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB3O75112 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDB3O75112 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB3O75112 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB3O75112 ABALON-201ENST00000629058 1903 ntBASIC17.09■□□□□ 0.33
LDB3O75112 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.09■□□□□ 0.33
LDB3O75112 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LDB3O75112 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
LDB3O75112 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.09■□□□□ 0.33
LDB3O75112 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 AL645929.1-201ENST00000420084 975 ntBASIC17.09■□□□□ 0.33
LDB3O75112 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.09■□□□□ 0.33
LDB3O75112 AP003733.1-201ENST00000491725 852 ntBASIC17.09■□□□□ 0.33
LDB3O75112 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 AL121956.5-201ENST00000625261 221 ntBASIC17.09■□□□□ 0.33
LDB3O75112 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms