Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC11O43248 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.47■□□□□ 0.55
HOXC11O43248 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC11O43248 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.47■□□□□ 0.55
HOXC11O43248 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
HOXC11O43248 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HOXC11O43248 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
HOXC11O43248 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.47■□□□□ 0.55
HOXC11O43248 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC11O43248 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC11O43248 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HOXC11O43248 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.46■□□□□ 0.55
HOXC11O43248 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HOXC11O43248 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HOXC11O43248 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.46■□□□□ 0.55
HOXC11O43248 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
HOXC11O43248 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.46■□□□□ 0.55
HOXC11O43248 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.46■□□□□ 0.55
HOXC11O43248 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.46■□□□□ 0.55
HOXC11O43248 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HOXC11O43248 AC008608.2-201ENST00000606089 416 ntBASIC18.46■□□□□ 0.55
HOXC11O43248 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.46■□□□□ 0.55
HOXC11O43248 INTS4P1-201ENST00000438455 1935 ntBASIC18.46■□□□□ 0.55
HOXC11O43248 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
HOXC11O43248 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.46■□□□□ 0.55
HOXC11O43248 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HOXC11O43248 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HOXC11O43248 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC11O43248 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
HOXC11O43248 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HOXC11O43248 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HOXC11O43248 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.45■□□□□ 0.54
HOXC11O43248 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 RBM17P3-201ENST00000417687 1192 ntBASIC18.45■□□□□ 0.54
HOXC11O43248 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 AC112698.1-201ENST00000510299 916 ntBASIC18.45■□□□□ 0.54
HOXC11O43248 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HOXC11O43248 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.45■□□□□ 0.54
HOXC11O43248 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 AL355877.3-201ENST00000622820 899 ntBASIC18.45■□□□□ 0.54
HOXC11O43248 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
HOXC11O43248 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HOXC11O43248 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HOXC11O43248 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.45■□□□□ 0.54
HOXC11O43248 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC11O43248 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
HOXC11O43248 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HOXC11O43248 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HOXC11O43248 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms