Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TP73-AS1-210ENST00000637775 1455 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 RPS2P28-201ENST00000314255 741 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 MIR149-201ENST00000384879 89 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 SCARNA2-201ENST00000458748 420 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC22.88■■□□□ 1.25
NPHP1O15259 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC22.88■■□□□ 1.25
NPHP1O15259 LITAF-211ENST00000572255 516 ntTSL 4 BASIC22.88■■□□□ 1.25
NPHP1O15259 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
NPHP1O15259 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 AC087289.5-201ENST00000586076 3175 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 AFG3L1P-217ENST00000557444 2447 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.87■■□□□ 1.25
NPHP1O15259 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.87■■□□□ 1.25
NPHP1O15259 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.87■■□□□ 1.25
NPHP1O15259 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC22.87■■□□□ 1.25
NPHP1O15259 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC22.87■■□□□ 1.25
NPHP1O15259 AL049840.3-201ENST00000602669 611 ntBASIC22.87■■□□□ 1.25
NPHP1O15259 AL355877.3-201ENST00000622820 899 ntBASIC22.87■■□□□ 1.25
NPHP1O15259 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
NPHP1O15259 MTMR9LP-203ENST00000426597 1545 ntBASIC22.87■■□□□ 1.25
NPHP1O15259 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NPHP1O15259 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.87■■□□□ 1.25
NPHP1O15259 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 AC009102.3-201ENST00000623118 1491 ntBASIC22.86■■□□□ 1.25
NPHP1O15259 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.86■■□□□ 1.25
NPHP1O15259 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.86■■□□□ 1.25
NPHP1O15259 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC22.86■■□□□ 1.25
NPHP1O15259 ASL-204ENST00000395331 1538 ntTSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.86■■□□□ 1.25
NPHP1O15259 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC22.86■■□□□ 1.25
NPHP1O15259 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
NPHP1O15259 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
NPHP1O15259 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC22.85■■□□□ 1.25
NPHP1O15259 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP1O15259 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP1O15259 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC22.85■■□□□ 1.25
NPHP1O15259 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 BX842568.4-201ENST00000421222 227 ntBASIC22.85■■□□□ 1.25
NPHP1O15259 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP1O15259 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC22.85■■□□□ 1.25
NPHP1O15259 AC018712.1-201ENST00000455767 687 ntBASIC22.85■■□□□ 1.25
NPHP1O15259 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
NPHP1O15259 MIR7706-201ENST00000613747 67 ntBASIC22.85■■□□□ 1.25
NPHP1O15259 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 CAND2-206ENST00000626378 333 ntTSL 5 BASIC22.85■■□□□ 1.25
NPHP1O15259 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP1O15259 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.85■■□□□ 1.25
NPHP1O15259 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
NPHP1O15259 AL032819.2-201ENST00000624543 2162 ntBASIC22.84■■□□□ 1.25
NPHP1O15259 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 AC112777.1-201ENST00000540175 1423 ntBASIC22.84■■□□□ 1.25
NPHP1O15259 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
NPHP1O15259 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
NPHP1O15259 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 RBM17P3-201ENST00000417687 1192 ntBASIC22.84■■□□□ 1.25
NPHP1O15259 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
NPHP1O15259 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC22.84■■□□□ 1.25
NPHP1O15259 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms