Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 AL024508.2-201ENST00000607749 1894 ntBASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 MINOS1P3-201ENST00000457048 203 ntBASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 KRT18P31-201ENST00000506277 1292 ntBASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 NSUN5P1-202ENST00000421140 1535 ntBASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 NSUN5P2-203ENST00000457352 1529 ntBASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
TRAV40A0A0B4J280 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 TSPY12P-201ENST00000421279 868 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AC246785.2-201ENST00000432512 513 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 FAAHP1-202ENST00000446499 1238 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AC113404.2-201ENST00000507884 177 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AP005901.3-202ENST00000581653 237 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 AC098818.2-201ENST00000564925 2320 ntBASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV40A0A0B4J280 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms