Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP3Q9Y6I4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 AC093010.1-201ENST00000473625 1624 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 ABALON-201ENST00000629058 1903 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP3Q9Y6I4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19■□□□□ 0.63
USP3Q9Y6I4 AL845331.1-201ENST00000424978 1190 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19■□□□□ 0.63
USP3Q9Y6I4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19■□□□□ 0.63
USP3Q9Y6I4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
USP3Q9Y6I4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USP3Q9Y6I4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 AC009154.2-201ENST00000621177 724 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 AC124864.1-201ENST00000623408 392 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 AC132938.6-201ENST00000623828 1655 ntBASIC19■□□□□ 0.63
USP3Q9Y6I4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
USP3Q9Y6I4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP3Q9Y6I4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19■□□□□ 0.63
USP3Q9Y6I4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP3Q9Y6I4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 TSPY12P-201ENST00000421279 868 ntBASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AC068472.1-201ENST00000474589 881 ntBASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP3Q9Y6I4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 KRT18P65-201ENST00000439811 1286 ntBASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms