Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 PMPCAP1-201ENST00000508114 1576 ntBASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 AC004449.1-201ENST00000564240 433 ntBASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 AC022494.1-201ENST00000466044 728 ntBASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 AQP6-205ENST00000618286 829 ntTSL 5 BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
COL17A1Q9UMD9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 HLA-DRB6-201ENST00000411500 1235 ntBASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL17A1Q9UMD9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 MIR4751-201ENST00000578027 74 ntBASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
COL17A1Q9UMD9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 AL024508.2-201ENST00000607749 1894 ntBASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 AC236430.1-201ENST00000402231 743 ntBASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 CIPC-205ENST00000555437 566 ntTSL 3 BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL17A1Q9UMD9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL17A1Q9UMD9 AC006504.4-201ENST00000592118 1568 ntBASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC27.39■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms