Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 AL024508.2-201ENST00000607749 1894 ntBASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 MIR3687-2-201ENST00000577708 61 ntBASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 MIR3687-1-201ENST00000614492 61 ntBASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC34.47■■■■□ 3.11
SHROOM4Q9ULL8 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AC021087.4-201ENST00000563761 564 ntBASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 MIR149-201ENST00000384879 89 ntBASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 AC112482.1-201ENST00000492080 688 ntBASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
SHROOM4Q9ULL8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC34.45■■■■□ 3.11
SHROOM4Q9ULL8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
SHROOM4Q9ULL8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC34.45■■■■□ 3.11
SHROOM4Q9ULL8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
SHROOM4Q9ULL8 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC34.45■■■■□ 3.1
SHROOM4Q9ULL8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC34.45■■■■□ 3.1
SHROOM4Q9ULL8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
SHROOM4Q9ULL8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC34.45■■■■□ 3.1
SHROOM4Q9ULL8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 AC112777.1-201ENST00000540175 1423 ntBASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 AC008735.5-201ENST00000623544 497 ntBASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC34.44■■■■□ 3.1
SHROOM4Q9ULL8 HLA-J-201ENST00000462773 1622 ntBASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 AC009102.3-201ENST00000623118 1491 ntBASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC34.43■■■■□ 3.1
SHROOM4Q9ULL8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 YBX1P5-201ENST00000509441 847 ntBASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 AC025062.2-201ENST00000605477 670 ntBASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
SHROOM4Q9ULL8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 METTL21AP1-201ENST00000438852 635 ntBASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 AC012640.2-201ENST00000561606 901 ntBASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 MTDHP3-201ENST00000594186 672 ntBASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 AL139288.1-201ENST00000623748 933 ntBASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
SHROOM4Q9ULL8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms