Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLCF1Q9UBD9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 TPM4P1-201ENST00000436100 807 ntBASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 FOSL1P1-201ENST00000511041 816 ntBASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AC011840.4-201ENST00000578471 627 ntBASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AL732292.2-201ENST00000609649 430 ntBASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 AL121772.3-201ENST00000610840 674 ntBASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.16■□□□□ 0.18
CLCF1Q9UBD9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 NSUN5P1-202ENST00000421140 1535 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 NSUN5P2-203ENST00000457352 1529 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 AC126763.1-201ENST00000552015 2118 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 UNC93B7-201ENST00000509439 705 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 AC099336.1-202ENST00000602961 463 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 AC138894.3-201ENST00000603787 634 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 AC009154.2-201ENST00000621177 724 ntBASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLCF1Q9UBD9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
CLCF1Q9UBD9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 GMCL1P1-201ENST00000463439 1581 ntBASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 LINC00602-201ENST00000629776 2065 ntBASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 KRT18P31-201ENST00000506277 1292 ntBASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 IFNL4P1-201ENST00000607083 540 ntBASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLCF1Q9UBD9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms