Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 AC133561.5-201ENST00000635547 218 ntBASIC19.55■□□□□ 0.72
SIX2Q9NPC8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX2Q9NPC8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 AC100803.2-201ENST00000562459 1963 ntBASIC19.54■□□□□ 0.72
SIX2Q9NPC8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 AC073508.3-201ENST00000619697 1419 ntBASIC19.54■□□□□ 0.72
SIX2Q9NPC8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 AC073912.3-201ENST00000624414 853 ntBASIC19.54■□□□□ 0.72
SIX2Q9NPC8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX2Q9NPC8 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.53■□□□□ 0.72
SIX2Q9NPC8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SIX2Q9NPC8 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 TERF1P1-201ENST00000311003 1181 ntBASIC19.52■□□□□ 0.72
SIX2Q9NPC8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 RASA4DP-201ENST00000460726 1199 ntBASIC19.52■□□□□ 0.72
SIX2Q9NPC8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX2Q9NPC8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
SIX2Q9NPC8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms