Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AC027612.4-201ENST00000605371 583 ntBASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 C20orf181-201ENST00000623918 480 ntBASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 PGM5P2-202ENST00000637225 1043 ntBASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 LINC01126-201ENST00000623515 1646 ntBASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF541Q9H0D2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 AC007967.3-201ENST00000434308 558 ntBASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 AC011467.4-201ENST00000594891 528 ntBASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 AC239800.4-201ENST00000603712 296 ntBASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 AC073592.4-201ENST00000623827 446 ntBASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
ZNF541Q9H0D2 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
ZNF541Q9H0D2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
ZNF541Q9H0D2 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 PMPCAP1-201ENST00000508114 1576 ntBASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 SPCS2P1-201ENST00000561636 679 ntBASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF541Q9H0D2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms