Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 KRT17P6-201ENST00000453795 1220 ntBASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 AC104819.1-201ENST00000504587 486 ntBASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 AC112777.1-201ENST00000540175 1423 ntBASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAIPQ9BWF2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 AC009102.3-201ENST00000623118 1491 ntBASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
TRAIPQ9BWF2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 KRT18P31-201ENST00000506277 1292 ntBASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 AC091304.2-201ENST00000564639 760 ntBASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 IFNL4P1-201ENST00000607083 540 ntBASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 AC124864.1-201ENST00000623408 392 ntBASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAIPQ9BWF2 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRAIPQ9BWF2 AL845331.1-201ENST00000424978 1190 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms