Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AL162727.3-201ENST00000635661 2787 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC008040.2-201ENST00000461049 708 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC133681.1-201ENST00000465482 601 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC026271.3-201ENST00000571884 352 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC233263.1-201ENST00000578059 224 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 OR6D1P-202ENST00000641007 5290 ntBASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28BQ9BUN5 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AC093010.1-201ENST00000473625 1624 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AL023284.2-201ENST00000405850 579 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 FAM207BP-201ENST00000447172 505 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AP002982.1-201ENST00000492365 877 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 AC130371.2-201ENST00000619443 611 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 PP12613-201ENST00000424958 2230 ntBASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28BQ9BUN5 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 AL513477.1-201ENST00000602865 2407 ntBASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 MCCD1P1-208ENST00000445732 328 ntBASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 AC026366.1-201ENST00000488803 879 ntBASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 AC110285.5-201ENST00000611501 352 ntBASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms