Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 KRT16P1-201ENST00000399124 1418 ntBASIC15.93■□□□□ 0.14
NKX3-1Q99801 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 AL096828.2-201ENST00000567259 1965 ntBASIC15.93■□□□□ 0.14
NKX3-1Q99801 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 GNAS-203ENST00000306120 1878 ntBASIC15.93■□□□□ 0.14
NKX3-1Q99801 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 PP12613-201ENST00000424958 2230 ntBASIC15.92■□□□□ 0.14
NKX3-1Q99801 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NKX3-1Q99801 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
NKX3-1Q99801 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 KSR1P1-201ENST00000446298 240 ntBASIC15.91■□□□□ 0.14
NKX3-1Q99801 FAM207BP-201ENST00000447172 505 ntBASIC15.91■□□□□ 0.14
NKX3-1Q99801 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 MYC-208ENST00000641036 567 ntBASIC15.91■□□□□ 0.14
NKX3-1Q99801 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NKX3-1Q99801 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.91■□□□□ 0.14
NKX3-1Q99801 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 GPAT2P1-201ENST00000444924 1672 ntBASIC15.9■□□□□ 0.14
NKX3-1Q99801 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms