Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 BX640515.1-201ENST00000617215 977 ntBASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 PMS2P1-201ENST00000431037 1228 ntBASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 AC005332.3-201ENST00000589904 676 ntBASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 BICD1-207ENST00000551848 1962 ntBASIC21.52■■□□□ 1.04
NKX2-3Q8TAU0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
NKX2-3Q8TAU0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.52■■□□□ 1.03
NKX2-3Q8TAU0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
NKX2-3Q8TAU0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
NKX2-3Q8TAU0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 AC024563.2-201ENST00000603282 481 ntBASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 AL390719.2-201ENST00000606993 987 ntBASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 LINC00167-201ENST00000530583 1419 ntBASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 Z83836.1-201ENST00000624605 1642 ntBASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
NKX2-3Q8TAU0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.5■■□□□ 1.03
NKX2-3Q8TAU0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms