Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 SAPCD2P3-201ENST00000455031 850 ntBASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 NUS1P2-201ENST00000417358 873 ntBASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 AP001005.1-201ENST00000571755 1248 ntBASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 AC005082.1-201ENST00000413042 2259 ntBASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HDDC3Q8N4P3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 AF228730.7-201ENST00000641842 219 ntBASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDDC3Q8N4P3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms