Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 UNC93B6-202ENST00000528242 690 ntBASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 AC105339.3-201ENST00000560043 636 ntBASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 NKAPP1-205ENST00000585790 367 ntBASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 AC004967.1-201ENST00000453589 447 ntBASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 MTDHP4-201ENST00000600287 670 ntBASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 AL139288.1-201ENST00000623748 933 ntBASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC44A3Q8N4M1 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 LINC00602-201ENST00000629776 2065 ntBASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 RNA5SP416-201ENST00000516838 111 ntBASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 AC107918.4-202ENST00000641623 219 ntBASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 AC134684.3-201ENST00000641758 218 ntBASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC44A3Q8N4M1 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 AC022898.2-201ENST00000616822 1312 ntBASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SLC44A3Q8N4M1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 AP002414.3-201ENST00000589352 1468 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms