Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
VPS8Q8N3P4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
VPS8Q8N3P4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
VPS8Q8N3P4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 NUS1P2-201ENST00000417358 873 ntBASIC28.35■■■□□ 2.13
VPS8Q8N3P4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 BICD1-207ENST00000551848 1962 ntBASIC28.35■■■□□ 2.13
VPS8Q8N3P4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS8Q8N3P4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS8Q8N3P4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS8Q8N3P4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC28.32■■■□□ 2.12
VPS8Q8N3P4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 EMD-201ENST00000369835 966 ntTSL 3 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 AC011467.2-201ENST00000598425 242 ntBASIC28.31■■■□□ 2.12
VPS8Q8N3P4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
VPS8Q8N3P4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 AC100803.2-201ENST00000562459 1963 ntBASIC28.3■■■□□ 2.12
VPS8Q8N3P4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms