Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 TSPY7P-201ENST00000431358 1114 ntBASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CA15P1-201ENST00000481698 905 ntBASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 TMEM191A-211ENST00000637163 1067 ntBASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLIP4Q8N3C7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CLIP4Q8N3C7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 MIR4674-201ENST00000582457 87 ntBASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 PCDHA12-202ENST00000613593 2588 ntBASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.08■□□□□ 0.32
CLIP4Q8N3C7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 RBM17P1-201ENST00000453646 1190 ntBASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 AP005242.2-201ENST00000580065 1175 ntBASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ESPNP-201ENST00000270691 2015 ntBASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 AC099343.3-201ENST00000605834 2503 ntBASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms