Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
LRRK2Q5S007 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.72■□□□□ 0.11
LRRK2Q5S007 AC025048.6-201ENST00000634326 1161 ntBASIC15.72■□□□□ 0.11
LRRK2Q5S007 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LRRK2Q5S007 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRRK2Q5S007 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 AC073592.5-201ENST00000624854 528 ntBASIC15.71■□□□□ 0.11
LRRK2Q5S007 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 IRX1P1-201ENST00000438849 1838 ntBASIC15.71■□□□□ 0.11
LRRK2Q5S007 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 FAM86GP-201ENST00000448322 971 ntBASIC15.71■□□□□ 0.11
LRRK2Q5S007 INGX-202ENST00000489074 768 ntBASIC15.71■□□□□ 0.11
LRRK2Q5S007 AL353135.1-201ENST00000606729 504 ntBASIC15.71■□□□□ 0.11
LRRK2Q5S007 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
LRRK2Q5S007 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LRRK2Q5S007 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
LRRK2Q5S007 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
LRRK2Q5S007 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRRK2Q5S007 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRRK2Q5S007 AC008761.3-201ENST00000624803 892 ntBASIC15.7■□□□□ 0.1
LRRK2Q5S007 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LRRK2Q5S007 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LRRK2Q5S007 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
LRRK2Q5S007 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 IGLL3P-201ENST00000412472 434 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC010654.1-201ENST00000615722 808 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 AL589182.2-201ENST00000619332 1049 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC010507.1-201ENST00000633895 436 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 LINC00602-201ENST00000629776 2065 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC020907.5-201ENST00000624372 1936 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 FAM58CP-201ENST00000435741 640 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 AC027307.3-201ENST00000594262 1100 ntBASIC15.69■□□□□ 0.1
LRRK2Q5S007 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
LRRK2Q5S007 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LRRK2Q5S007 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms