Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 RCC2P3-201ENST00000418112 1537 ntBASIC16.32■□□□□ 0.2
CCDC58Q4VC31 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.32■□□□□ 0.2
CCDC58Q4VC31 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 KRT16P5-201ENST00000455284 522 ntBASIC16.32■□□□□ 0.2
CCDC58Q4VC31 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 UNC93B5-201ENST00000530315 699 ntBASIC16.32■□□□□ 0.2
CCDC58Q4VC31 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 MTDHP1-201ENST00000605323 784 ntBASIC16.32■□□□□ 0.2
CCDC58Q4VC31 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 AC098934.4-201ENST00000564127 592 ntBASIC16.31■□□□□ 0.2
CCDC58Q4VC31 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC58Q4VC31 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 AP000593.1-201ENST00000393668 712 ntBASIC16.3■□□□□ 0.2
CCDC58Q4VC31 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms