Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC30.37■■■□□ 2.45
CUX1P39880 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 SRP19-202ENST00000445150 833 ntTSL 2 BASIC30.37■■■□□ 2.45
CUX1P39880 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC30.37■■■□□ 2.45
CUX1P39880 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC30.37■■■□□ 2.45
CUX1P39880 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 AL022326.1-202ENST00000641533 845 ntBASIC30.37■■■□□ 2.45
CUX1P39880 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC30.36■■■□□ 2.45
CUX1P39880 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC30.36■■■□□ 2.45
CUX1P39880 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CUX1P39880 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC30.36■■■□□ 2.45
CUX1P39880 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC30.36■■■□□ 2.45
CUX1P39880 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC30.36■■■□□ 2.45
CUX1P39880 MIR3687-2-201ENST00000577708 61 ntBASIC30.36■■■□□ 2.45
CUX1P39880 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC30.36■■■□□ 2.45
CUX1P39880 MIR3687-1-201ENST00000614492 61 ntBASIC30.36■■■□□ 2.45
CUX1P39880 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
CUX1P39880 COBL-210ENST00000632460 1941 ntTSL 5 BASIC30.36■■■□□ 2.45
CUX1P39880 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC30.35■■■□□ 2.45
CUX1P39880 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC30.35■■■□□ 2.45
CUX1P39880 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC30.35■■■□□ 2.45
CUX1P39880 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
CUX1P39880 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
CUX1P39880 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC30.35■■■□□ 2.45
CUX1P39880 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 AC096633.1-201ENST00000422446 749 ntBASIC30.35■■■□□ 2.45
CUX1P39880 MCCD1P2-201ENST00000423228 335 ntBASIC30.35■■■□□ 2.45
CUX1P39880 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC30.35■■■□□ 2.45
CUX1P39880 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CUX1P39880 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 SPDYE21P-201ENST00000413323 827 ntBASIC30.34■■■□□ 2.45
CUX1P39880 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC30.34■■■□□ 2.45
CUX1P39880 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC30.34■■■□□ 2.45
CUX1P39880 AC006557.2-201ENST00000592985 1240 ntBASIC30.34■■■□□ 2.45
CUX1P39880 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC30.34■■■□□ 2.45
CUX1P39880 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC30.34■■■□□ 2.45
CUX1P39880 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC30.34■■■□□ 2.45
CUX1P39880 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX1P39880 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC30.34■■■□□ 2.45
CUX1P39880 AC005082.1-201ENST00000413042 2259 ntBASIC30.33■■■□□ 2.45
CUX1P39880 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX1P39880 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
CUX1P39880 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 SNCG-201ENST00000348795 684 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX1P39880 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX1P39880 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
CUX1P39880 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
CUX1P39880 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC30.33■■■□□ 2.45
CUX1P39880 METTL21AP1-201ENST00000438852 635 ntBASIC30.33■■■□□ 2.45
CUX1P39880 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
CUX1P39880 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC30.33■■■□□ 2.45
CUX1P39880 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC30.33■■■□□ 2.45
CUX1P39880 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC30.33■■■□□ 2.45
CUX1P39880 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
CUX1P39880 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX1P39880 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.45
CUX1P39880 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
CUX1P39880 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC30.32■■■□□ 2.44
CUX1P39880 AC136632.2-201ENST00000512891 861 ntBASIC30.32■■■□□ 2.44
CUX1P39880 COX5A-206ENST00000568783 571 ntTSL 3 BASIC30.32■■■□□ 2.44
CUX1P39880 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC30.32■■■□□ 2.44
CUX1P39880 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
CUX1P39880 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX1P39880 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC30.32■■■□□ 2.44
CUX1P39880 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC30.32■■■□□ 2.44
CUX1P39880 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
CUX1P39880 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX1P39880 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC30.32■■■□□ 2.44
CUX1P39880 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX1P39880 LBH-203ENST00000404397 543 ntTSL 4 BASIC30.32■■■□□ 2.44
CUX1P39880 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC30.32■■■□□ 2.44
CUX1P39880 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX1P39880 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC30.32■■■□□ 2.44
CUX1P39880 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC30.32■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms