Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.42■□□□□ 0.38
MSX2P35548 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.42■□□□□ 0.38
MSX2P35548 AC098934.4-201ENST00000564127 592 ntBASIC17.42■□□□□ 0.38
MSX2P35548 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.42■□□□□ 0.38
MSX2P35548 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.42■□□□□ 0.38
MSX2P35548 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.42■□□□□ 0.38
MSX2P35548 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 PRKY-204ENST00000533551 1019 ntBASIC17.41■□□□□ 0.38
MSX2P35548 MIR4758-201ENST00000577688 71 ntBASIC17.41■□□□□ 0.38
MSX2P35548 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.41■□□□□ 0.38
MSX2P35548 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.41■□□□□ 0.38
MSX2P35548 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSX2P35548 LINC00602-201ENST00000629776 2065 ntBASIC17.41■□□□□ 0.38
MSX2P35548 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.41■□□□□ 0.38
MSX2P35548 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSX2P35548 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX2P35548 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX2P35548 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 AL023806.1-201ENST00000603994 1649 ntBASIC17.4■□□□□ 0.38
MSX2P35548 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
MSX2P35548 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX2P35548 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 SLC29A4P1-201ENST00000398760 971 ntBASIC17.4■□□□□ 0.38
MSX2P35548 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.4■□□□□ 0.38
MSX2P35548 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.4■□□□□ 0.38
MSX2P35548 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX2P35548 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.4■□□□□ 0.38
MSX2P35548 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.4■□□□□ 0.38
MSX2P35548 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
MSX2P35548 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
MSX2P35548 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
MSX2P35548 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX2P35548 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MSX2P35548 AL139384.1-201ENST00000612143 3047 ntBASIC17.39■□□□□ 0.38
MSX2P35548 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
MSX2P35548 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
MSX2P35548 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MSX2P35548 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
MSX2P35548 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.39■□□□□ 0.37
MSX2P35548 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.39■□□□□ 0.37
MSX2P35548 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 AC004264.1-201ENST00000608354 794 ntBASIC17.39■□□□□ 0.37
MSX2P35548 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
MSX2P35548 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms