Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RORAP35398 MYLKP1-201ENST00000509077 1580 ntBASIC17.29■□□□□ 0.36
RORAP35398 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RORAP35398 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.29■□□□□ 0.36
RORAP35398 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RORAP35398 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.29■□□□□ 0.36
RORAP35398 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.29■□□□□ 0.36
RORAP35398 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 UNC93B7-201ENST00000509439 705 ntBASIC17.29■□□□□ 0.36
RORAP35398 GUSBP12-201ENST00000513727 720 ntBASIC17.29■□□□□ 0.36
RORAP35398 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.29■□□□□ 0.36
RORAP35398 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.29■□□□□ 0.36
RORAP35398 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.29■□□□□ 0.36
RORAP35398 RN7SL510P-201ENST00000581311 263 ntBASIC17.29■□□□□ 0.36
RORAP35398 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.29■□□□□ 0.36
RORAP35398 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.29■□□□□ 0.36
RORAP35398 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RORAP35398 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.28■□□□□ 0.36
RORAP35398 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
RORAP35398 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 AC020763.4-201ENST00000623414 4170 ntBASIC17.28■□□□□ 0.36
RORAP35398 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.28■□□□□ 0.36
RORAP35398 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.28■□□□□ 0.36
RORAP35398 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RORAP35398 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.28■□□□□ 0.36
RORAP35398 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RORAP35398 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RORAP35398 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RORAP35398 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.27■□□□□ 0.36
RORAP35398 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.27■□□□□ 0.36
RORAP35398 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.27■□□□□ 0.36
RORAP35398 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.27■□□□□ 0.36
RORAP35398 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RORAP35398 AC004263.2-201ENST00000617183 678 ntBASIC17.27■□□□□ 0.36
RORAP35398 AC124864.1-201ENST00000623408 392 ntBASIC17.27■□□□□ 0.36
RORAP35398 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
RORAP35398 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
RORAP35398 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
RORAP35398 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.27■□□□□ 0.35
RORAP35398 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RORAP35398 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.26■□□□□ 0.35
RORAP35398 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RORAP35398 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RORAP35398 SDHAP2-201ENST00000455183 2001 ntBASIC17.26■□□□□ 0.35
RORAP35398 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
RORAP35398 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms