Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 HBZP1-201ENST00000354915 429 ntBASIC17.85■□□□□ 0.45
SHMT2P34897 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 MIR149-201ENST00000384879 89 ntBASIC17.85■□□□□ 0.45
SHMT2P34897 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.85■□□□□ 0.45
SHMT2P34897 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.85■□□□□ 0.45
SHMT2P34897 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHMT2P34897 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.85■□□□□ 0.45
SHMT2P34897 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.85■□□□□ 0.45
SHMT2P34897 AL136038.4-201ENST00000603606 1261 ntBASIC17.85■□□□□ 0.45
SHMT2P34897 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
SHMT2P34897 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 HYMAI.1-201ENST00000620949 238 ntBASIC17.85■□□□□ 0.45
SHMT2P34897 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHMT2P34897 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
SHMT2P34897 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHMT2P34897 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 AC067852.2-201ENST00000590513 2313 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 AL499627.1-201ENST00000569373 2188 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 AC009102.3-201ENST00000623118 1491 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 AC092597.1-201ENST00000487352 616 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.84■□□□□ 0.45
SHMT2P34897 ZNF444P1-201ENST00000559497 298 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 AC083849.1-201ENST00000615227 514 ntBASIC17.84■□□□□ 0.45
SHMT2P34897 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.84■□□□□ 0.45
SHMT2P34897 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHMT2P34897 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHMT2P34897 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.83■□□□□ 0.45
SHMT2P34897 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHMT2P34897 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
SHMT2P34897 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.83■□□□□ 0.45
SHMT2P34897 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SHMT2P34897 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHMT2P34897 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHMT2P34897 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHMT2P34897 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.83■□□□□ 0.45
SHMT2P34897 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.83■□□□□ 0.45
SHMT2P34897 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHMT2P34897 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.83■□□□□ 0.44
SHMT2P34897 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.83■□□□□ 0.44
SHMT2P34897 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.83■□□□□ 0.44
SHMT2P34897 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.83■□□□□ 0.44
SHMT2P34897 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.83■□□□□ 0.44
SHMT2P34897 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SHMT2P34897 AC079602.3-201ENST00000623931 403 ntBASIC17.83■□□□□ 0.44
SHMT2P34897 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SHMT2P34897 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms