Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 LINC00265-3P-201ENST00000447588 903 ntBASIC14.09□□□□□ -0.15
HOXD3P31249 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXD3P31249 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXD3P31249 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD3P31249 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD3P31249 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HOXD3P31249 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD3P31249 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
HOXD3P31249 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.08□□□□□ -0.15
HOXD3P31249 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD3P31249 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.15
HOXD3P31249 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD3P31249 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD3P31249 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXD3P31249 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD3P31249 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 AC090340.1-201ENST00000620778 4980 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
HOXD3P31249 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD3P31249 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD3P31249 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.08□□□□□ -0.16
HOXD3P31249 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.08□□□□□ -0.16
HOXD3P31249 IFNL4P1-201ENST00000607083 540 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 AL732292.2-201ENST00000609649 430 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD3P31249 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
HOXD3P31249 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXD3P31249 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 AC005082.1-201ENST00000413042 2259 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD3P31249 AC126763.1-201ENST00000552015 2118 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 AC093503.3-201ENST00000624917 2352 ntBASIC14.08□□□□□ -0.16
HOXD3P31249 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HOXD3P31249 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD3P31249 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 RNF126P1-202ENST00000569893 925 ntBASIC14.07□□□□□ -0.16
HOXD3P31249 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD3P31249 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
HOXD3P31249 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD3P31249 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD3P31249 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD3P31249 KRT8P10-201ENST00000450021 1447 ntBASIC14.07□□□□□ -0.16
HOXD3P31249 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms