Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.61■□□□□ 0.89
COL11A1P12107 AC008735.5-201ENST00000623544 497 ntBASIC20.61■□□□□ 0.89
COL11A1P12107 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.61■□□□□ 0.89
COL11A1P12107 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
COL11A1P12107 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.61■□□□□ 0.89
COL11A1P12107 AC079776.2-201ENST00000641154 1609 ntBASIC20.61■□□□□ 0.89
COL11A1P12107 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL11A1P12107 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL11A1P12107 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.6■□□□□ 0.89
COL11A1P12107 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.6■□□□□ 0.89
COL11A1P12107 AC096633.1-201ENST00000422446 749 ntBASIC20.6■□□□□ 0.89
COL11A1P12107 AC034105.1-201ENST00000563488 319 ntBASIC20.6■□□□□ 0.89
COL11A1P12107 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.6■□□□□ 0.89
COL11A1P12107 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.6■□□□□ 0.89
COL11A1P12107 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.6■□□□□ 0.89
COL11A1P12107 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.6■□□□□ 0.89
COL11A1P12107 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.6■□□□□ 0.89
COL11A1P12107 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL11A1P12107 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.6■□□□□ 0.89
COL11A1P12107 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.6■□□□□ 0.89
COL11A1P12107 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.6■□□□□ 0.89
COL11A1P12107 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL11A1P12107 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
COL11A1P12107 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL11A1P12107 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.59■□□□□ 0.89
COL11A1P12107 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.59■□□□□ 0.89
COL11A1P12107 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.59■□□□□ 0.89
COL11A1P12107 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.59■□□□□ 0.89
COL11A1P12107 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.59■□□□□ 0.89
COL11A1P12107 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL11A1P12107 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.59■□□□□ 0.89
COL11A1P12107 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL11A1P12107 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.58■□□□□ 0.89
COL11A1P12107 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.58■□□□□ 0.89
COL11A1P12107 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.58■□□□□ 0.89
COL11A1P12107 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
COL11A1P12107 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.58■□□□□ 0.89
COL11A1P12107 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.58■□□□□ 0.89
COL11A1P12107 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.58■□□□□ 0.89
COL11A1P12107 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
COL11A1P12107 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL11A1P12107 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.88
COL11A1P12107 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.58■□□□□ 0.88
COL11A1P12107 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.58■□□□□ 0.88
COL11A1P12107 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.58■□□□□ 0.88
COL11A1P12107 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL11A1P12107 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.57■□□□□ 0.88
COL11A1P12107 AC010327.4-202ENST00000591484 748 ntBASIC20.57■□□□□ 0.88
COL11A1P12107 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 AC140113.2-201ENST00000604370 208 ntBASIC20.57■□□□□ 0.88
COL11A1P12107 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.57■□□□□ 0.88
COL11A1P12107 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.57■□□□□ 0.88
COL11A1P12107 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL11A1P12107 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL11A1P12107 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.57■□□□□ 0.88
COL11A1P12107 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms