Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.9■□□□□ 0.78
CLDN3O15551 BX276092.5-203ENST00000456199 560 ntBASIC19.9■□□□□ 0.78
CLDN3O15551 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.9■□□□□ 0.78
CLDN3O15551 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CLDN3O15551 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CLDN3O15551 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 AC069148.1-201ENST00000608741 768 ntBASIC19.9■□□□□ 0.78
CLDN3O15551 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.9■□□□□ 0.78
CLDN3O15551 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.9■□□□□ 0.78
CLDN3O15551 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CLDN3O15551 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CLDN3O15551 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.9■□□□□ 0.78
CLDN3O15551 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.9■□□□□ 0.78
CLDN3O15551 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CLDN3O15551 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.89■□□□□ 0.77
CLDN3O15551 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CLDN3O15551 AC113404.2-201ENST00000507884 177 ntBASIC19.89■□□□□ 0.77
CLDN3O15551 KRT8P26-201ENST00000534154 1276 ntBASIC19.89■□□□□ 0.77
CLDN3O15551 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 AL390719.2-201ENST00000606993 987 ntBASIC19.89■□□□□ 0.77
CLDN3O15551 AL121672.3-201ENST00000608644 468 ntBASIC19.89■□□□□ 0.77
CLDN3O15551 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CLDN3O15551 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN3O15551 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN3O15551 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
CLDN3O15551 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN3O15551 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN3O15551 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 AC016734.2-201ENST00000624325 1377 ntBASIC19.87■□□□□ 0.77
CLDN3O15551 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.87■□□□□ 0.77
CLDN3O15551 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms