Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 KRT8P7-201ENST00000533003 1432 ntBASIC17.29■□□□□ 0.36
UPK1AO00322 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 LINC01568-207ENST00000641790 1380 ntBASIC17.28■□□□□ 0.36
UPK1AO00322 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UPK1AO00322 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.28■□□□□ 0.36
UPK1AO00322 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UPK1AO00322 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 KRT18P23-201ENST00000435622 1283 ntBASIC17.28■□□□□ 0.36
UPK1AO00322 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.28■□□□□ 0.36
UPK1AO00322 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.28■□□□□ 0.36
UPK1AO00322 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 PP12613-201ENST00000424958 2230 ntBASIC17.28■□□□□ 0.36
UPK1AO00322 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.28■□□□□ 0.36
UPK1AO00322 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
UPK1AO00322 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPK1AO00322 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.27■□□□□ 0.36
UPK1AO00322 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 HMGA1P5-201ENST00000412453 271 ntBASIC17.27■□□□□ 0.36
UPK1AO00322 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
UPK1AO00322 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
UPK1AO00322 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.27■□□□□ 0.36
UPK1AO00322 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPK1AO00322 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.27■□□□□ 0.36
UPK1AO00322 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.27■□□□□ 0.35
UPK1AO00322 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.27■□□□□ 0.35
UPK1AO00322 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPK1AO00322 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
UPK1AO00322 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPK1AO00322 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPK1AO00322 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UPK1AO00322 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.27■□□□□ 0.35
UPK1AO00322 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.26■□□□□ 0.35
UPK1AO00322 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.26■□□□□ 0.35
UPK1AO00322 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.26■□□□□ 0.35
UPK1AO00322 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.26■□□□□ 0.35
UPK1AO00322 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 AC099343.3-201ENST00000605834 2503 ntBASIC17.26■□□□□ 0.35
UPK1AO00322 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms