Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.43■□□□□ 0.54
AP3B1O00203 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.43■□□□□ 0.54
AP3B1O00203 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.42■□□□□ 0.54
AP3B1O00203 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.42■□□□□ 0.54
AP3B1O00203 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.42■□□□□ 0.54
AP3B1O00203 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.42■□□□□ 0.54
AP3B1O00203 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 AC009947.2-201ENST00000444014 672 ntBASIC18.42■□□□□ 0.54
AP3B1O00203 SEC1P-202ENST00000473944 940 ntBASIC18.42■□□□□ 0.54
AP3B1O00203 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.42■□□□□ 0.54
AP3B1O00203 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.42■□□□□ 0.54
AP3B1O00203 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP3B1O00203 LINC01126-201ENST00000623515 1646 ntBASIC18.41■□□□□ 0.54
AP3B1O00203 AL024508.2-201ENST00000607749 1894 ntBASIC18.41■□□□□ 0.54
AP3B1O00203 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.41■□□□□ 0.54
AP3B1O00203 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.41■□□□□ 0.54
AP3B1O00203 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 FAM87A-204ENST00000613235 858 ntBASIC18.41■□□□□ 0.54
AP3B1O00203 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 KRT18P22-201ENST00000402024 1347 ntBASIC18.41■□□□□ 0.54
AP3B1O00203 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.41■□□□□ 0.54
AP3B1O00203 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.41■□□□□ 0.54
AP3B1O00203 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP3B1O00203 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
AP3B1O00203 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
AP3B1O00203 KRT18P55-202ENST00000578578 1546 ntBASIC18.4■□□□□ 0.54
AP3B1O00203 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
AP3B1O00203 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP3B1O00203 INGX-201ENST00000359239 846 ntBASIC18.4■□□□□ 0.54
AP3B1O00203 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms