Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 VENTXP5-201ENST00000523979 775 ntBASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 AC069148.1-201ENST00000608741 768 ntBASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MCCD1P1-208ENST00000445732 328 ntBASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 AC126763.1-201ENST00000552015 2118 ntBASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MIR3180-5-201ENST00000583743 153 ntBASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 AC005332.1-201ENST00000577698 1310 ntBASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHB3Q9Y5E6 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 KRT18P38-201ENST00000449496 1282 ntBASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHB3Q9Y5E6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms