Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX41Q9UJV9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 AC012313.1-201ENST00000593393 3059 ntBASIC20.97■□□□□ 0.95
DDX41Q9UJV9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 AL450487.1-201ENST00000426799 995 ntBASIC20.97■□□□□ 0.95
DDX41Q9UJV9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 MIR3180-1-201ENST00000580374 94 ntBASIC20.97■□□□□ 0.95
DDX41Q9UJV9 MIR3180-3-201ENST00000584616 94 ntBASIC20.97■□□□□ 0.95
DDX41Q9UJV9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 AC093525.10-201ENST00000625130 1569 ntBASIC20.97■□□□□ 0.95
DDX41Q9UJV9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
DDX41Q9UJV9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AC106820.2-201ENST00000563775 3264 ntBASIC20.96■□□□□ 0.95
DDX41Q9UJV9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AP002383.4-201ENST00000442518 975 ntBASIC20.96■□□□□ 0.95
DDX41Q9UJV9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AC012313.10-201ENST00000623509 926 ntBASIC20.96■□□□□ 0.95
DDX41Q9UJV9 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
DDX41Q9UJV9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
DDX41Q9UJV9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.95■□□□□ 0.95
DDX41Q9UJV9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 AC099398.1-201ENST00000567919 2776 ntBASIC20.95■□□□□ 0.94
DDX41Q9UJV9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 KRT8P26-201ENST00000534154 1276 ntBASIC20.95■□□□□ 0.94
DDX41Q9UJV9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 AC092329.2-201ENST00000598402 547 ntBASIC20.95■□□□□ 0.94
DDX41Q9UJV9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
DDX41Q9UJV9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX41Q9UJV9 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms