Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 AC097493.4-201ENST00000641197 219 ntBASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPF3BQ9BZI7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.77■■□□□ 1.08
UPF3BQ9BZI7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
UPF3BQ9BZI7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
UPF3BQ9BZI7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 RCN1P1-201ENST00000400413 996 ntBASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 AC087499.1-201ENST00000418141 1075 ntBASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 EGLN1P1-201ENST00000531623 762 ntBASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 AC112497.1-201ENST00000624824 639 ntBASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPF3BQ9BZI7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 ARMC10P1-201ENST00000313754 855 ntBASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 LTB4R2-202ENST00000528054 3092 ntBASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
UPF3BQ9BZI7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms