Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM56Q9BRZ2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM56Q9BRZ2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 RBM17P1-201ENST00000453646 1190 ntBASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 MIR4497-201ENST00000583208 89 ntBASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM56Q9BRZ2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 AP000525.1-201ENST00000608286 694 ntBASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM56Q9BRZ2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms