Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 MIR4745-201ENST00000577608 62 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 Z92544.3-201ENST00000624747 417 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
IFT140Q96RY7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
IFT140Q96RY7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
IFT140Q96RY7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
IFT140Q96RY7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 AC122714.2-201ENST00000502787 707 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC30.06■■■□□ 2.4
IFT140Q96RY7 AF228730.6-201ENST00000641497 218 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 AC084121.3-201ENST00000641716 218 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 AC105233.6-201ENST00000642093 218 ntBASIC30.06■■■□□ 2.4
IFT140Q96RY7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 AC010654.1-201ENST00000615722 808 ntBASIC30.05■■■□□ 2.4
IFT140Q96RY7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC30.05■■■□□ 2.4
IFT140Q96RY7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC30.04■■■□□ 2.4
IFT140Q96RY7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC30.04■■■□□ 2.4
IFT140Q96RY7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC30.04■■■□□ 2.4
IFT140Q96RY7 AC190387.1-201ENST00000551683 408 ntBASIC30.04■■■□□ 2.4
IFT140Q96RY7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC30.04■■■□□ 2.4
IFT140Q96RY7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC30.04■■■□□ 2.4
IFT140Q96RY7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
IFT140Q96RY7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC30.03■■■□□ 2.4
IFT140Q96RY7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
IFT140Q96RY7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
IFT140Q96RY7 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC30.02■■■□□ 2.4
IFT140Q96RY7 FAM58CP-201ENST00000435741 640 ntBASIC30.02■■■□□ 2.4
IFT140Q96RY7 RPS15P9-201ENST00000494093 319 ntBASIC30.02■■■□□ 2.4
IFT140Q96RY7 KRT19P2-202ENST00000557173 1012 ntBASIC30.02■■■□□ 2.4
IFT140Q96RY7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC30.02■■■□□ 2.4
IFT140Q96RY7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
IFT140Q96RY7 AC092667.1-201ENST00000434301 2586 ntBASIC30.02■■■□□ 2.4
IFT140Q96RY7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
IFT140Q96RY7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.4
IFT140Q96RY7 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
IFT140Q96RY7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC30.01■■■□□ 2.4
IFT140Q96RY7 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC30.01■■■□□ 2.4
IFT140Q96RY7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
IFT140Q96RY7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.4
IFT140Q96RY7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC30.01■■■□□ 2.39
IFT140Q96RY7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC30.01■■■□□ 2.39
IFT140Q96RY7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
IFT140Q96RY7 KRT8P47-201ENST00000604727 1398 ntBASIC30.01■■■□□ 2.39
IFT140Q96RY7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
IFT140Q96RY7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC30.01■■■□□ 2.39
IFT140Q96RY7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC30■■■□□ 2.39
IFT140Q96RY7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
IFT140Q96RY7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC30■■■□□ 2.39
IFT140Q96RY7 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC30■■■□□ 2.39
IFT140Q96RY7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC30■■■□□ 2.39
IFT140Q96RY7 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC30■■■□□ 2.39
IFT140Q96RY7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC30■■■□□ 2.39
IFT140Q96RY7 AJ011932.1-201ENST00000621707 465 ntBASIC30■■■□□ 2.39
IFT140Q96RY7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC30■■■□□ 2.39
IFT140Q96RY7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
IFT140Q96RY7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms