Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
USP28Q96RU2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.89■□□□□ 0.93
USP28Q96RU2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.88■□□□□ 0.93
USP28Q96RU2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
USP28Q96RU2 KRT17P2-201ENST00000300992 1314 ntBASIC20.88■□□□□ 0.93
USP28Q96RU2 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USP28Q96RU2 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 EGLN1P1-201ENST00000531623 762 ntBASIC20.88■□□□□ 0.93
USP28Q96RU2 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.88■□□□□ 0.93
USP28Q96RU2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USP28Q96RU2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
USP28Q96RU2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USP28Q96RU2 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP28Q96RU2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP28Q96RU2 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.87■□□□□ 0.93
USP28Q96RU2 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.87■□□□□ 0.93
USP28Q96RU2 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.87■□□□□ 0.93
USP28Q96RU2 MIR4497-201ENST00000583208 89 ntBASIC20.87■□□□□ 0.93
USP28Q96RU2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 AC010240.3-201ENST00000607688 395 ntBASIC20.87■□□□□ 0.93
USP28Q96RU2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.87■□□□□ 0.93
USP28Q96RU2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.87■□□□□ 0.93
USP28Q96RU2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.87■□□□□ 0.93
USP28Q96RU2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP28Q96RU2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP28Q96RU2 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 AC006116.8-202ENST00000587620 1550 ntBASIC20.86■□□□□ 0.93
USP28Q96RU2 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 SEC1P-202ENST00000473944 940 ntBASIC20.86■□□□□ 0.93
USP28Q96RU2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.86■□□□□ 0.93
USP28Q96RU2 MIR3180-4-201ENST00000582223 153 ntBASIC20.86■□□□□ 0.93
USP28Q96RU2 AP006294.2-201ENST00000641667 209 ntBASIC20.86■□□□□ 0.93
USP28Q96RU2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP28Q96RU2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
USP28Q96RU2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP28Q96RU2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP28Q96RU2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
USP28Q96RU2 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP28Q96RU2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP28Q96RU2 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.85■□□□□ 0.93
USP28Q96RU2 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP28Q96RU2 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.85■□□□□ 0.93
USP28Q96RU2 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms