Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD1Q96NR3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
PTCHD1Q96NR3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.21■□□□□ 0.34
PTCHD1Q96NR3 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.21■□□□□ 0.34
PTCHD1Q96NR3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.21■□□□□ 0.34
PTCHD1Q96NR3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 MIR662-201ENST00000384847 95 ntBASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 AC024563.2-201ENST00000603282 481 ntBASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD1Q96NR3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 KRT18P48-201ENST00000434763 852 ntBASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 AC116407.4-201ENST00000623319 1061 ntBASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 AL162741.1-201ENST00000565563 1558 ntBASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD1Q96NR3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD1Q96NR3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms