Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 BX276092.5-203ENST00000456199 560 ntBASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AC011498.5-201ENST00000592027 486 ntBASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP3Q96DZ5 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 KRT18P48-201ENST00000434763 852 ntBASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AC007613.1-201ENST00000572811 2597 ntBASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP3Q96DZ5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 TNRC18P3-201ENST00000441896 2691 ntBASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP3Q96DZ5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 AL121672.3-201ENST00000608644 468 ntBASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms