Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC012317.2-201ENST00000623305 2251 ntBASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC036111.1-201ENST00000533973 1582 ntBASIC16.41■□□□□ 0.22
PTP4A1Q93096 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTP4A1Q93096 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 CA15P1-201ENST00000481698 905 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 AP003071.4-201ENST00000562276 1284 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 MIR4497-201ENST00000583208 89 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 DGCR10-201ENST00000609839 495 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 REXO1L10P-201ENST00000615707 1290 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 REXO1L12P-201ENST00000622156 912 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 AC066615.1-201ENST00000640911 628 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.4■□□□□ 0.22
PTP4A1Q93096 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTP4A1Q93096 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.4■□□□□ 0.22
PTP4A1Q93096 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 AL356309.3-201ENST00000624132 1934 ntBASIC16.39■□□□□ 0.21
PTP4A1Q93096 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 TSPY7P-201ENST00000431358 1114 ntBASIC16.39■□□□□ 0.21
PTP4A1Q93096 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 SNORA78-201ENST00000459373 127 ntBASIC16.39■□□□□ 0.21
PTP4A1Q93096 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 AC097488.1-201ENST00000507834 756 ntBASIC16.39■□□□□ 0.21
PTP4A1Q93096 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 MIR3180-5-201ENST00000583743 153 ntBASIC16.39■□□□□ 0.21
PTP4A1Q93096 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.39■□□□□ 0.21
PTP4A1Q93096 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTP4A1Q93096 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms