Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 AC068472.1-201ENST00000474589 881 ntBASIC18.27■□□□□ 0.52
HMGB4Q8WW32 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
HMGB4Q8WW32 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 AC112777.1-201ENST00000540175 1423 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 AC117500.6-201ENST00000624871 588 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 SDHAP2-201ENST00000455183 2001 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 AC120498.9-201ENST00000339021 3867 ntBASIC18.26■□□□□ 0.51
HMGB4Q8WW32 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB4Q8WW32 MYLKP1-201ENST00000509077 1580 ntBASIC18.25■□□□□ 0.51
HMGB4Q8WW32 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 AL024508.2-201ENST00000607749 1894 ntBASIC18.25■□□□□ 0.51
HMGB4Q8WW32 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 AC073648.2-201ENST00000510116 352 ntBASIC18.25■□□□□ 0.51
HMGB4Q8WW32 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 MTDHP3-201ENST00000594186 672 ntBASIC18.25■□□□□ 0.51
HMGB4Q8WW32 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB4Q8WW32 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 RNPS1P1-201ENST00000507437 918 ntBASIC18.24■□□□□ 0.51
HMGB4Q8WW32 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGB4Q8WW32 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms