Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 CA15P1-201ENST00000481698 905 ntBASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 AC080080.1-201ENST00000625121 2420 ntBASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RPS4Y2Q8TD47 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 LINC01126-201ENST00000623515 1646 ntBASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 PEX7-202ENST00000367756 680 ntTSL 3 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 AC066615.1-201ENST00000640911 628 ntBASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.97■□□□□ 0.15
RPS4Y2Q8TD47 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 MIR4674-201ENST00000582457 87 ntBASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 DGCR10-201ENST00000609839 495 ntBASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 BCL2-203ENST00000589955 5011 ntBASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
RPS4Y2Q8TD47 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
RPS4Y2Q8TD47 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms