Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
FOXA1P55317 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
FOXA1P55317 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
FOXA1P55317 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.68■□□□□ 0.42
FOXA1P55317 TSPY17P-201ENST00000450329 467 ntBASIC17.68■□□□□ 0.42
FOXA1P55317 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 AC008550.1-201ENST00000511500 884 ntBASIC17.68■□□□□ 0.42
FOXA1P55317 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
FOXA1P55317 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA1P55317 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
FOXA1P55317 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.68■□□□□ 0.42
FOXA1P55317 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.67■□□□□ 0.42
FOXA1P55317 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 AC006116.8-202ENST00000587620 1550 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 KRT8P7-201ENST00000533003 1432 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA1P55317 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 AC007663.1-201ENST00000438948 1240 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA1P55317 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.67■□□□□ 0.42
FOXA1P55317 FITM1-202ENST00000559294 800 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 PP12613-201ENST00000424958 2230 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 AL024508.2-201ENST00000607749 1894 ntBASIC17.67■□□□□ 0.42
FOXA1P55317 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
FOXA1P55317 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA1P55317 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA1P55317 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA1P55317 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
FOXA1P55317 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
FOXA1P55317 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
FOXA1P55317 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.66■□□□□ 0.42
FOXA1P55317 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXA1P55317 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
FOXA1P55317 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA1P55317 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
FOXA1P55317 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
FOXA1P55317 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.65■□□□□ 0.42
FOXA1P55317 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms