Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.72■□□□□ 0.43
HNF4AP41235 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 SDHAP2-201ENST00000455183 2001 ntBASIC17.72■□□□□ 0.43
HNF4AP41235 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.71■□□□□ 0.43
HNF4AP41235 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HNF4AP41235 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 AC024243.1-201ENST00000609234 778 ntBASIC17.71■□□□□ 0.43
HNF4AP41235 AC141257.4-201ENST00000634557 245 ntBASIC17.71■□□□□ 0.43
HNF4AP41235 AC136944.6-201ENST00000634818 245 ntBASIC17.71■□□□□ 0.43
HNF4AP41235 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HNF4AP41235 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HNF4AP41235 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
HNF4AP41235 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HNF4AP41235 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.71■□□□□ 0.43
HNF4AP41235 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.42
HNF4AP41235 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.71■□□□□ 0.42
HNF4AP41235 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
HNF4AP41235 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.7■□□□□ 0.42
HNF4AP41235 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.7■□□□□ 0.42
HNF4AP41235 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.7■□□□□ 0.42
HNF4AP41235 NEK4P2-201ENST00000580004 1012 ntBASIC17.7■□□□□ 0.42
HNF4AP41235 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.7■□□□□ 0.42
HNF4AP41235 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
HNF4AP41235 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HNF4AP41235 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HNF4AP41235 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms